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State Estimation
Example results
Cell type query
Gene lists
Help
Terms of use
Results for query id test_10x_8k_pbmc
Data stats
Results are available:
Data downloads
Cell Type Report
Pre-processed cells
Post-processed cells
Cluster means
Label heatmap
Dendrogram
Genes
Gene correlation heatmap
Colormap 1:
Cluster
nslookup_hitwbripxqofd42f9e
acux2613C0BEz1C0BCz2a90bcxuca2613
acx
echo_vnxtxl_ckqogqnzxyua__echo_vnxtxl_ckqogqnzxyua
1W7RR2J3NUCP_W7RR2J
1ltScRiPtgtMON79521lt_sCripTgt
1
invalid
1WM5O4KLLUKF_WM5O4K
2fetc2fpasswd
printmd531337a
nslookup_hitodiggxlxsn02e35
WEB-INFweb
cellmesh_cluster_labels
acu6394EFBC9Cs1EFB9A5s2CABAs3CAB9uca6394
WEB-INF_web
unexisting_
1some_inexistent_file_with_long_name00
1scriptMON79068_script
http_some-inexistent-website
Cell type report
etc_passwd00
etc_
1img_sRchttp_attacker-9455_log
proc_version
98991979969899197996
1iframe_srcdatatext_htmlbase64PHNjcmlwdD5hbGVydCgnYWN1bmV0aXgteHNzLXRlc3QnKTwvc2NyaXB0Pgo_invalid9111
acux5956C0BEz1C0BCz2a90bcxuca5956
1body_onloadMON79429
nslookup_hitlmlngmvzgbb6355
echo_yzmmgx_tkhdhcnzxyua__echo_yzmmgx_tkhdhcnzxyua
hosts
acux3147C0BEz1C0BCz2a90bcxuca3147
1u003CScRiPtMON79185u003C_sCripTu003E
1bodyacuExpre__SSionMON79830
windows_win
14NOXF9_x9306
1ScRiPt_acu_src_xss
tht
Http_bxss
A
nRLNM
acu10971EFBC9Cs1EFB9A5s2CABAs3CAB9uca10971
2F
1ScRiPt_MON79473_ScRiPt
gethostbynamelchited
1_contenteditable_onresizeMON79234
313C536352695074203E4D4F4E37289307293C2F7343726970543E
printmd531337
10x_8k_labels
AcuTest7813
c0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afwindowsc0afwin
acx9899197996xca
1r5oNmn
31226F6E6D6F7573656F7665723D4D4F4E372839353335342922
windowswin
file_etc_passwd
http_bxss
nslookup_hitjaulyxaqsb89302
a_HrEFhttp_xss
5c
1img_srcxyz_OnErRorMON79959
rjOHo
acu5456EFBC9Cs1EFB9A5s2CABAs3CAB9uca5456
a_HrEFjaVaScRiPT
1ScRiPt
acx__9899197996__
1u0022onmouseoverMON796423u0022
19835575
nslookup_hitzggthldmps8036d
file
13C5363523C5363526950743E4970543E4D4F4E372839363330293C2F7343723C5363526950743E4970543E
CWS070E000x9C8D1NC34010EDFAE8DBDI08D3401DA0A205091189HiP
boot
1JgQGk
c0af
echo_hgltms_bxcgsmnzxyua__echo_hgltms_bxcgsmnzxyua
bxss
acu8201EFBC9Cs1EFB9A5s2CABAs3CAB9uca8201
1input_autofocus_onfocusMON79098
19128570
etc_passwd
1ifRAme_sRc9593
1isindex_typeimage_src1_onerrorMON79888
1img_src_xss
acux8871C0BEz1C0BCz2a90bcxuca8871
1img_src
nslookup_hitbevrrxvyiz37f16
acu9403EFBC9Cs1EFB9A5s2CABAs3CAB9uca9403
acux3062C0BEz1C0BCz2a90bcxuca3062
Colormap 2:
Cluster
nslookup_hitwbripxqofd42f9e
acux2613C0BEz1C0BCz2a90bcxuca2613
acx
echo_vnxtxl_ckqogqnzxyua__echo_vnxtxl_ckqogqnzxyua
1W7RR2J3NUCP_W7RR2J
1ltScRiPtgtMON79521lt_sCripTgt
1
invalid
1WM5O4KLLUKF_WM5O4K
2fetc2fpasswd
printmd531337a
nslookup_hitodiggxlxsn02e35
WEB-INFweb
cellmesh_cluster_labels
acu6394EFBC9Cs1EFB9A5s2CABAs3CAB9uca6394
WEB-INF_web
unexisting_
1some_inexistent_file_with_long_name00
1scriptMON79068_script
http_some-inexistent-website
Cell type report
etc_passwd00
etc_
1img_sRchttp_attacker-9455_log
proc_version
98991979969899197996
1iframe_srcdatatext_htmlbase64PHNjcmlwdD5hbGVydCgnYWN1bmV0aXgteHNzLXRlc3QnKTwvc2NyaXB0Pgo_invalid9111
acux5956C0BEz1C0BCz2a90bcxuca5956
1body_onloadMON79429
nslookup_hitlmlngmvzgbb6355
echo_yzmmgx_tkhdhcnzxyua__echo_yzmmgx_tkhdhcnzxyua
hosts
acux3147C0BEz1C0BCz2a90bcxuca3147
1u003CScRiPtMON79185u003C_sCripTu003E
1bodyacuExpre__SSionMON79830
windows_win
14NOXF9_x9306
1ScRiPt_acu_src_xss
tht
Http_bxss
A
nRLNM
acu10971EFBC9Cs1EFB9A5s2CABAs3CAB9uca10971
2F
1ScRiPt_MON79473_ScRiPt
gethostbynamelchited
1_contenteditable_onresizeMON79234
313C536352695074203E4D4F4E37289307293C2F7343726970543E
printmd531337
10x_8k_labels
AcuTest7813
c0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afwindowsc0afwin
acx9899197996xca
1r5oNmn
31226F6E6D6F7573656F7665723D4D4F4E372839353335342922
windowswin
file_etc_passwd
http_bxss
nslookup_hitjaulyxaqsb89302
a_HrEFhttp_xss
5c
1img_srcxyz_OnErRorMON79959
rjOHo
acu5456EFBC9Cs1EFB9A5s2CABAs3CAB9uca5456
a_HrEFjaVaScRiPT
1ScRiPt
acx__9899197996__
1u0022onmouseoverMON796423u0022
19835575
nslookup_hitzggthldmps8036d
file
13C5363523C5363526950743E4970543E4D4F4E372839363330293C2F7343723C5363526950743E4970543E
CWS070E000x9C8D1NC34010EDFAE8DBDI08D3401DA0A205091189HiP
boot
1JgQGk
c0af
echo_hgltms_bxcgsmnzxyua__echo_hgltms_bxcgsmnzxyua
bxss
acu8201EFBC9Cs1EFB9A5s2CABAs3CAB9uca8201
1input_autofocus_onfocusMON79098
19128570
etc_passwd
1ifRAme_sRc9593
1isindex_typeimage_src1_onerrorMON79888
1img_src_xss
acux8871C0BEz1C0BCz2a90bcxuca8871
1img_src
nslookup_hitbevrrxvyiz37f16
acu9403EFBC9Cs1EFB9A5s2CABAs3CAB9uca9403
acux3062C0BEz1C0BCz2a90bcxuca3062
Submit
Selected genes:
Log-transform data:
Normalize by gene:
Submit
Selected genes 1:
Selected genes 2:
Selected cluster:
All cells
Submit
Selected genes 1:
Selected genes 2:
Cluster 1:
Cluster 2:
P-value
Difference of correlations
Submit
Download plot as svg
Download plot data as table
Cell labels:
Cluster
Entropy
Gene
Cluster weights
Read counts
nslookup_hitwbripxqofd42f9e
acux2613C0BEz1C0BCz2a90bcxuca2613
acx
echo_vnxtxl_ckqogqnzxyua__echo_vnxtxl_ckqogqnzxyua
1W7RR2J3NUCP_W7RR2J
1ltScRiPtgtMON79521lt_sCripTgt
1
invalid
1WM5O4KLLUKF_WM5O4K
2fetc2fpasswd
printmd531337a
nslookup_hitodiggxlxsn02e35
WEB-INFweb
cellmesh_cluster_labels
acu6394EFBC9Cs1EFB9A5s2CABAs3CAB9uca6394
WEB-INF_web
unexisting_
1some_inexistent_file_with_long_name00
1scriptMON79068_script
http_some-inexistent-website
Cell type report
etc_passwd00
etc_
1img_sRchttp_attacker-9455_log
proc_version
98991979969899197996
1iframe_srcdatatext_htmlbase64PHNjcmlwdD5hbGVydCgnYWN1bmV0aXgteHNzLXRlc3QnKTwvc2NyaXB0Pgo_invalid9111
acux5956C0BEz1C0BCz2a90bcxuca5956
1body_onloadMON79429
nslookup_hitlmlngmvzgbb6355
echo_yzmmgx_tkhdhcnzxyua__echo_yzmmgx_tkhdhcnzxyua
hosts
acux3147C0BEz1C0BCz2a90bcxuca3147
1u003CScRiPtMON79185u003C_sCripTu003E
1bodyacuExpre__SSionMON79830
windows_win
14NOXF9_x9306
1ScRiPt_acu_src_xss
tht
Http_bxss
A
nRLNM
acu10971EFBC9Cs1EFB9A5s2CABAs3CAB9uca10971
2F
1ScRiPt_MON79473_ScRiPt
gethostbynamelchited
1_contenteditable_onresizeMON79234
313C536352695074203E4D4F4E37289307293C2F7343726970543E
printmd531337
10x_8k_labels
AcuTest7813
c0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afwindowsc0afwin
acx9899197996xca
1r5oNmn
31226F6E6D6F7573656F7665723D4D4F4E372839353335342922
windowswin
file_etc_passwd
http_bxss
nslookup_hitjaulyxaqsb89302
a_HrEFhttp_xss
5c
1img_srcxyz_OnErRorMON79959
rjOHo
acu5456EFBC9Cs1EFB9A5s2CABAs3CAB9uca5456
a_HrEFjaVaScRiPT
1ScRiPt
acx__9899197996__
1u0022onmouseoverMON796423u0022
19835575
nslookup_hitzggthldmps8036d
file
13C5363523C5363526950743E4970543E4D4F4E372839363330293C2F7343723C5363526950743E4970543E
CWS070E000x9C8D1NC34010EDFAE8DBDI08D3401DA0A205091189HiP
boot
1JgQGk
c0af
echo_hgltms_bxcgsmnzxyua__echo_hgltms_bxcgsmnzxyua
bxss
acu8201EFBC9Cs1EFB9A5s2CABAs3CAB9uca8201
1input_autofocus_onfocusMON79098
19128570
etc_passwd
1ifRAme_sRc9593
1isindex_typeimage_src1_onerrorMON79888
1img_src_xss
acux8871C0BEz1C0BCz2a90bcxuca8871
1img_src
nslookup_hitbevrrxvyiz37f16
acu9403EFBC9Cs1EFB9A5s2CABAs3CAB9uca9403
acux3062C0BEz1C0BCz2a90bcxuca3062
Upload cell labels
Custom cell selection
Cluster ID:
Submit
Gene name:
Raw data
Post-processed
Submit
Upload color track here
Type of color track:
Continuous
Discrete
Table
Submit
Custom label:
New label
Label name:
Label color (optional):
Selection type:
Cluster
Selection
Gene
nslookup_hitwbripxqofd42f9e
acux2613C0BEz1C0BCz2a90bcxuca2613
acx
echo_vnxtxl_ckqogqnzxyua__echo_vnxtxl_ckqogqnzxyua
1W7RR2J3NUCP_W7RR2J
1ltScRiPtgtMON79521lt_sCripTgt
1
invalid
1WM5O4KLLUKF_WM5O4K
2fetc2fpasswd
printmd531337a
nslookup_hitodiggxlxsn02e35
WEB-INFweb
cellmesh_cluster_labels
acu6394EFBC9Cs1EFB9A5s2CABAs3CAB9uca6394
WEB-INF_web
unexisting_
1some_inexistent_file_with_long_name00
1scriptMON79068_script
http_some-inexistent-website
Cell type report
etc_passwd00
etc_
1img_sRchttp_attacker-9455_log
proc_version
98991979969899197996
1iframe_srcdatatext_htmlbase64PHNjcmlwdD5hbGVydCgnYWN1bmV0aXgteHNzLXRlc3QnKTwvc2NyaXB0Pgo_invalid9111
acux5956C0BEz1C0BCz2a90bcxuca5956
1body_onloadMON79429
nslookup_hitlmlngmvzgbb6355
echo_yzmmgx_tkhdhcnzxyua__echo_yzmmgx_tkhdhcnzxyua
hosts
acux3147C0BEz1C0BCz2a90bcxuca3147
1u003CScRiPtMON79185u003C_sCripTu003E
1bodyacuExpre__SSionMON79830
windows_win
14NOXF9_x9306
1ScRiPt_acu_src_xss
tht
Http_bxss
A
nRLNM
acu10971EFBC9Cs1EFB9A5s2CABAs3CAB9uca10971
2F
1ScRiPt_MON79473_ScRiPt
gethostbynamelchited
1_contenteditable_onresizeMON79234
313C536352695074203E4D4F4E37289307293C2F7343726970543E
printmd531337
10x_8k_labels
AcuTest7813
c0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afc0aec0aec0afwindowsc0afwin
acx9899197996xca
1r5oNmn
31226F6E6D6F7573656F7665723D4D4F4E372839353335342922
windowswin
file_etc_passwd
http_bxss
nslookup_hitjaulyxaqsb89302
a_HrEFhttp_xss
5c
1img_srcxyz_OnErRorMON79959
rjOHo
acu5456EFBC9Cs1EFB9A5s2CABAs3CAB9uca5456
a_HrEFjaVaScRiPT
1ScRiPt
acx__9899197996__
1u0022onmouseoverMON796423u0022
19835575
nslookup_hitzggthldmps8036d
file
13C5363523C5363526950743E4970543E4D4F4E372839363330293C2F7343723C5363526950743E4970543E
CWS070E000x9C8D1NC34010EDFAE8DBDI08D3401DA0A205091189HiP
boot
1JgQGk
c0af
echo_hgltms_bxcgsmnzxyua__echo_hgltms_bxcgsmnzxyua
bxss
acu8201EFBC9Cs1EFB9A5s2CABAs3CAB9uca8201
1input_autofocus_onfocusMON79098
19128570
etc_passwd
1ifRAme_sRc9593
1isindex_typeimage_src1_onerrorMON79888
1img_src_xss
acux8871C0BEz1C0BCz2a90bcxuca8871
1img_src
nslookup_hitbevrrxvyiz37f16
acu9403EFBC9Cs1EFB9A5s2CABAs3CAB9uca9403
acux3062C0BEz1C0BCz2a90bcxuca3062
=
!=
Delete
New criterion - AND
New criterion - OR
Submit
Get cell/cluster info
Recluster
Reanalyze
Re-run pipeline
Run batch effect correction
Copy dataset
Sub-select cells
Sub-select clusters
Re-run clustering
Split clusters
Merge clusters
Create new cluster
Delete cells
×
Clustering options
Argmax
Leiden
Louvain
Leiden_baseline
Top genes (1-vs-rest fold change)
Top genes (p-value of 1-vs-rest fold change)
Pairwise fold change
Pairwise p-value
Pairwise volcano plot
Violin plots for a gene
Highly expressed genes
Double-pair comparison
Top clusters by mean value for the given gene
Top clusters by nonzero proportion
Cluster 1:
Cluster 2:
Cluster 1:
Cluster 2:
Cluster 3:
Cluster 4:
Genes of interest (optional):
Submit
Use log-transform:
Use all clusters:
Number of top genes:
Download plot as svg
Gene set query
Cell similarity search
History
Gene set queries
Currently selected top genes:
Top genes go here
Database:
Enrichr
CellMarker
CellMeSH
CellMeSH-Anatomy
Gene Ontology
Bacillus subtilis
KEGG Pathways
Call Enrichr on selected genes
Gene set:
Human_Gene_Atlas
Mouse_Gene_Atlas
Allen_Brain_Atlas_up
ARCHS4_Tissues
ARCHS4_Cell-lines
GO_Biological_Process_2017
GO_Cellular_Component_2017
GO_Molecular_Function_2017
Jensen_COMPARTMENTS
Jensen_DISEASES
Jensen_TISSUES
KEGG_2016
Reactome_2016
Submit Enrichr query
Query CellMarker with selected genes
Statistical test:
Hypergeometric test
Species:
All
Homo sapiens
Mus musculus
Cells or tissues:
Cells
Tissues
Submit CellMarker query
Query CellMeSH with selected genes
Statistical test:
Hypergeometric test
Normalized Hypergeometric test
Probabilistic model
GSVA
Species:
Homo sapiens
Mus musculus
Human + mouse
C. Elegans
Submit CellMesh query
Query CellMeSH with selected genes
Statistical test:
Hypergeometric test
Normalized Hypergeometric test
Probabilistic model
GSVA
Species:
Homo sapiens
Mus musculus
Human + mouse
C. Elegans
MeSH root (optional):
Submit CellMesh Anatomy query
Query GO with selected genes
Species:
Homo sapiens
Mus musculus
FDR Threshold:
Submit GO query
Query Subtiwiki with selected genes
Subtiwiki category:
Gene categories
Regulons
Operons
All
Gene Info
Submit Subtiwiki query
Query GO with selected genes
Species:
Homo sapiens
Mus musculus
Both
Submit KEGG query
Cell similarity search
Database:
Tabula Muris
Allen Brain Atlas neocortex
Method:
Spearman
Cluster:
Submit
History