State Estimation

Upload a file containing single-cell RNASeq data, where each row is a gene and each column is a cell.

Sample Data

Example sparse matrix file: 10x pooled PBMCs, 400 cells, k=8

Method Details

This runs UNCURL state estimation on the given dataset, and returns an interactive visualization of the identified cell types. For details on the method, see https://doi.org/10.1101/2020.04.15.043737

For help on how to use UNCURL-App, see the Help page.

Data Input

Upload a text file formatted as a space-separated matrix, where each row is a gene and each column is a cell. Alternatively, this can be a sparse mtx (Matrix Market) file. Both types of input can be gzipped.

Input type:

Data shape:

Upload a list of gene names, with one name on each line, corresponding to the rows in the data matrix.

Optional: enter a name for the sample (only needed if more than one sample is used).

Optional: enter a name for the job.

Optional: Use batch effect correction (only needed if more than one sample is used)