UNCURL-App

UNCURL-App is a unified framework for interactively analyzing single-cell RNA-seq data. It is based on UNCURL for data preprocessing and clustering. It can be used to perform a variety of tasks such as:

• Preprocessing
• Clustering
• Dimensionality reduction
• Differential expression
• Interactive data analysis and visualization

If your data is smaller than 150MB, you can use the server at uncurl.cs.washington.edu. Otherwise, you should use the Docker image.

Source code (web app)

Source code (UNCURL)

Citation:

Zhang, Yue*, Shunfu Mao*, Sumit Mukherjee, Sreeram Kannan, and Georg Seelig. “UNCURL-App: Interactive Database-Driven Analysis of Single Cell RNA Sequencing Data.” BioRxiv, April 16, 2020, 2020.04.15.043737. https://doi.org/10.1101/2020.04.15.043737.